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V-ATPase

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Vacuolar type H+-ATPase (V-ATPase) is a highly conserved evolutionarily ancient enzyme with remarkably diverse functions in eukaryotic organisms. V-ATPases acidifiy a wide array of intracellular organelles and pump protons across the plasma membranes of numerous cell types. V-ATPases couple the energy of ATP hydrolysis to proton transport across intracellular and plasma membranes of eukaryotic cells.

Roles played by V-ATPases

V-ATPases are found within the membranes of many organelles, such as endosomes, lysosomes and secretory vesicles where they play a variety of roles crucial for the function of these organelles. For example, the proton gradient across the yeast vacuolar membrane generated by V-ATPases drives calcium uptake into the vacuole through an H+/Ca++ antiporter system (Ohya, 1991). V-ATPases also play an important role in synaptic transmission in neuronal cells. Norepinephrine enters vesicles in exhange for protons pumped by V-ATPase. V-ATPases are also found in the plasma membranes of a wide variety of cells such as intercalated cells of the kidney, osteoclasts (bone resorbing cells), macrophages, neutrophils, sperm, midgut cells of insects and certain tumor cells. Plasma membrane V-ATPases are involved in processes such as pH homeostasis, coupled transport and tumor metastasis. V-ATPases in the acrosomal membrane of sperm acidify the acrosome. This acidification activates proteases required to drill through the plasma membrane of the egg. V-ATPases in the osteoclast plasma membrane pump protons onto the bone surface which is necessary for bone resorption. In the intercalated cells of the kidney, V-ATPases pump protons into the urine, allowing for bicarbonate reabsorption into the blood.

V-ATPase structure

The yeast V-ATPase is the best characterized. There are at least 13 subunits identified to form a functional V-ATPase complex, which consists of two domains. The subunits belong to either the V_o domain (membrane associated subunits, lower case letters on the figure), or the V₁ domain (peripherally associated subunits, upper case letters on the figure). The V₁ includes 8 subunits, A-H, with three copies of the A and B subunits, one or two copies of E, and two copies of subunit G. The V₁ domain contains tissue specific subunit isoforms including B, C, E, and G. Mutations to the B1 isoform result in the human disease distal renal tubular acidosis and sensorineural deafness. The V_o domain contains 6 different subunits, a, d, c, c', c" and e, with possibly four copies of c and one copy of the remaining subunits. The mammalian V_o domain contains tissue specific isoforms for subunits a and d, while yeast V-ATPase contains two organelle specific subunit isoforms of a, Vph1p and Stv1p. Mutations to the a3 isoform result in the human disease infantile malignant osteopetrosis, and mutations to the a4 isoform result in distal renal tubular acidosis, in some cases with sensorineural deafness. The V₁ domain is responsible for ATP hydrolysis whereas the V_o domain is responsible for proton translocation. ATP hydrolysis at the catalytic nucleotide binding sites on subunit A drives rotation of a central stalk composed of subunits D and F, which in turn drives rotation of a barrel of c subunits relative to the a subunit. The amino-terminal of a (NT-a) along with subunits C, E, G and H compose the peripheral stalk. The carboxy-terminal of subunit a (CT-a) is held fixed relative to the A3B3 head by this peripheral stalk. Movement of the barrel of c subunits past the a subunit is thought to drive proton transport across the membrane. A stoicheometry of two protons translocated for each ATP hydrolyzed has been proposed by (Johnson, 1982). In addition to the structural subunits of yeast V-ATPase, associated proteins have been identified that are necessary for assembly. These associated proteins are essential for V_o domain assembly and are termed Vma12p, Vma21p and Vma22p (Hirata, 1993; Ho, 1993; Hill, 1994; Jackson, 1997). Two of the three proteins, Vma12p and Vma22p form a complex that binds transiently to Vph1p (subunit a) to aid its assembly and maturation (Hill, 1994; Hill, 1995; Graham, 1998; Graham, 2003). Vma21p coordinates assembly of the V_o subunits as well as escorting the V_o domain into vesicles for transport to the Golgi (Malkus, 2004).

V-ATPase assembly

Yeast V-ATPases fail to assemble when any of the genes that encode subunits are deleted except for subunits H and c" (Whyteside, 2005; Forgac, 1999; Stevens, 1997). Without subunit H, the assembled V-ATPase is not active (Ho, 1993; Parra, 2000) and the loss of the c" subunit results in uncoupling of enzymatic activity (Whyteside, 2005). The precise mechanisms by which V-ATPases assembly are still controversial with evidence suggesting two different possibilities. Mutational analysis and in vitro assays have shown that preassembled V_o and V₁ domains can combine to form one complex in a process called independent assembly. Support for independent assembly includes the findings that the assembled V_o domain can be found at the vacuole in the absence of the V₁ domain, whereas free V₁ domains can be found in the cytoplasm and not at the vacuole (Kane, 1995; Sumner, 1995). In contrast, in vivo pulse-chase experiments have revealed early interactions between V_o and V₁ subunits, specifically the a and B subunits, suggesting that subunits are added in a step-wise fashion to form a single complex in a concerted assembly process (Kane, 1999).

Regulation of V-ATPase activity

In vivo regulation of V-ATPase activity is accomplished by reversible dissociation of the V₁ domain from the V_o domain. After inital assembly, both the insect Manduca sexta and yeast V-ATPases can reversibly disassemble into free V_o and V₁ domains after a 2-5 min deprivation of glucose (Kane, 1995). Reversible disassembly may be a general mechanism of regulating V-ATPase activity since it exists in yeast and insects. Reassembly is proposed to be aided by a complex termed RAVE (regulator of H+-ATPase of vacuolar and endosomal membranes) (Kane and Smardon, 2003). Interestingly, dissasembly and reassembly of V-ATPases does not require new protein synthesis but does need an intact microtubular network (Holliday, 2000).

Human diseases

Osteopetrosis

Osteopetrosis is generic name that represents a group of heritable conditions in which there is a defect in osteoclastic bone resorption. Both dominant and recessive osteopetroses occur in humans {Michigami, 2002; Frattini, 2000}. Autosomal dominant osteopetrosis shows mild symptoms in adults who experience frequent bone fractures due to brittle bones {Michigami, 2002}. A form of osteopetrosis that is clinically more severe is termed autosomal recessive infantile malignant osteopetrosis {Frattini, 2000; Sobacchi, 2001; Fasth, 1999}. Three genes have been identified which are responsible for recessive osteopetrosis in humans. Interestingly, they are all directly involved in the proton generation and secretion pathways that are essential for bone resorption. One gene is carbonic anhydrase II (CAII) that when mutated causes osteopetrosis with renal tubular acidosis {Sly, 1983}. Mutations to the chloride channel ClC7 gene also lead to both dominant and recessive osteopetrosis {Michigami, 2002}. Approximately 50% of patients with recessive infantile malignant osteopetrosis have mutations to the a3 subunit isoform of V-ATPase {Sobacchi, 2001; Kornak, 2000; Frattini, 2003}. In humans, 26 mutations have been identified in V-ATPase subunit isoform a3, found in osteoclasts, that result in the bone disease autosomal recessive osteopetrosis {Frattini, 2000; Kornak, 2000; Sobacchi, 2001; Susani, 2004}

Distal renal tubular acidosis (dRTA)

The importance of V-ATPase activity in renal proton secretion is highlighted by the inherited disease distal renal tubule acidosis. In all cases, renal tubular acidosis results from a failure of the normal renal mechanisms that regulate systemic pH. There are four types of renal tubular acidosis. Type 1 is Distal renal tubular acidosis and results from a failure of the distal nephron to acidify the urine below pH 5. {Alper, 2002}. Some patients with recessive dRTA also have sensorineural hearing loss {Karet, 1999}. Inheritance of this type of RTA results from mutations to either V-ATPase subunit isoforms B1 or a4, or mutations to the AE1 Cl-/HCO3- exchanger {Stehberger, 2003; Karet, 1999; Karet, 1998}. Twelve different mutations to V-ATPase isoform B1 (Stover, 2002) and twenty-four different mutations in a4 lead to dRTA {Smith, 2000; Karet, 1999; Stover, 2005}. Reverse transcription polymerase chain reaction studies have shown expression of the a4 subunit in the intercalated cell of the kidney and in the cochlea {Stover, 2002}. dRTA caused by mutations in the a4 subunit gene in some cases can be associated with deafness {Stehberger, 2003}.

Nomenclature

The term V_o has a lowercase letter "o" (not the number "zero") in subscript. The "o" stands for oligomycin.

See also

- ATPases

- F-ATPase

- Na%2B/K%2B-ATPase

References

- Alper, S. L. Genetic diseases of acid-base transporters. Annu Rev Physiol, 2002. 64: p. 899-923. PMID 11826292

- Fasth, A., and Porras, O. Human malignant osteopetrosis: pathophysiology, management and the role of bone marrow transplantation. Pediatr Transplant, 1999. 3 Suppl 1: p. 102-7. PMID 10587979

- Forgac, M. The vacuolar H+-ATPase of clathrin-coated vesicles is reversibly inhibited by S-nitrosoglutathione. J Biol Chem, 1999. 274(3): p. 1301-5. PMID 9880499

- Frattini, A., et al., Defects in TCIRG1 subunit of the vacuolar proton pump are responsible for a subset of human autosomal recessive osteopetrosis. Nat Genet, 2000. 25(3): p. 343-6. PMID 10888887

- Frattini, A., et al., Chloride channel ClCN7 mutations are responsible for severe recessive, dominant, and intermediate osteopetrosis. J Bone Miner Res, 2003. 18(10): p. 1740-7. PMID 14584882

- Graham, L. A., Hill, K. J., and Stevens, T. H. Assembly of the yeast vacuolar H+-ATPase occurs in the endoplasmic reticulum and requires a Vma12p/Vma22p assembly complex. J Cell Biol, 1998. 142(1): p. 39-49. PMID 9660861

- Graham, L. A., Flannery, A. R., and Stevens, T. H. Structure and assembly of the yeast V-ATPase. J Bioenerg Biomembr, 2003. 35(4): p. 301-12. PMID 14635776

- Hill, K. J., et al., Vma21p is a yeast membrane protein retained in the endoplasmic reticulum by a di-lysine motif and is required for the assembly of the vacuolar H(+)-ATPase complex. Molecular Biology of the Cell, 1994. 5(9): p. 1039-50. PMID 7841520

- Hill, K. J., and Stevens, T. H. Vma22p is a novel endoplasmic reticulum-associated protein required for assembly of the yeast vacuolar H(+)-ATPase complex. The Journal of Biological Chemistry, 1995. 270(38): p. 22329-36. PMID 7673216

- Hirata, R., et al., VMA12 is essential for assembly of the vacuolar H(+)-ATPase subunits onto the vacuolar membrane in Saccharomyces cerevisiae. Journal of Biological Chemistry, 1993. 268(2): p. 961-7. PMID 8419376

- Ho, M. N., et al., VMA13 encodes a 54-kDa vacuolar H(+)-ATPase subunit required for activity but not assembly of the enzyme complex in Saccharomyces cerevisiae. Journal of Biological Chemistry, 1993. 268(1): p. 221-7. PMID 8349704

- Holliday, L. S., et al., The amino-terminal domain of the B subunit of vacuolar H+-ATPase contains a filamentous actin binding site. J Biol Chem, 2000. 275(41): p. 32331-7. PMID 10915794

- Jackson, D. D., and Stevens, T. H. VMA12 encodes a yeast endoplasmic reticulum protein required for vacuolar H+-ATPase assembly. J Biol Chem, 1997. 272(41): p. 25928-34. PMID 9325326

- Johnson, R. G., et al., H+ ATPase of chromaffin granules. Kinetics, regulation, and stoichiometry. J Biol Chem, 1982. 257(18): p. 10701-7. PMID 6213624

- Kane, P. M. Disassembly and reassembly of the yeast vacuolar H(+)-ATPase in vivo. J Biol Chem, 1995. 270(28): p. 17025-32. PMID 7622524

- Kane, P. M., et al., Early steps in assembly of the yeast vacuolar H+-ATPase. J Biol Chem, 1999. 274(24): p. 17275-83. PMID 10358087

- Kane, P.M., and Smardon, A.M., Assembly and regulation of the yeast vacuolar H+-ATPase. J Bioenerg Biomembr, 2003. 35(4) : p. 313-21. PMID 14635777

- Karet, F. E., et al., Mutations in the chloride-bicarbonate exchanger gene AE1 cause autosomal dominant but not autosomal recessive distal renal tubular acidosis. Proc Natl Acad Sci U S A, 1998. 95: p. 6337-42. PMID 9600966

- Karet, F. E., et al., Mutations in the gene encoding B1 subunit of H+-ATPase cause renal tubular acidosis with sensorineural deafness. Nat Genet, 1999. 21(1): p. 84-90. PMID 9916796

- Kornak, U., et al., Mutations in the a3 subunit of the vacuolar H(+)-ATPase cause infantile malignant osteopetrosis. Hum Mol Genet, 2000. 9(13): p. 2059-63. PMID 10942435

- Malkus, P., et al., Role of Vma21p in assembly and transport of the yeast vacuolar ATPase. Mol Biol Cell, 2004. 15: p. 5075-91. PMID 15356264

- Michigami, T., et al., Novel mutations in the a3 subunit of vacuolar H(+)-adenosine triphosphatase in a Japanese patient with infantile malignant osteopetrosis. Bone, 2002. 30(2),: p. 436-9. PMID 11856654

- Ohya, Y., et al., Calcium-sensitive cls mutants of Saccharomyces cerevisiae showing a Pet- phenotype are ascribable to defects of vacuolar membrane H(+)-ATPase activity. J Biol Chem, 1991. 266(21): p. 13971-7. PMID 1830311

- Parra, K. J., et al., The H subunit (Vma13p) of the yeast V-ATPase inhibits the ATPase activity of cytosolic V1 complexes. J Biol Chem, 2000. 275(28): p. 21761-7. PMID 10781598

- Sly, W. S., et al., Carbonic anhydrase II deficiency identified as the primary defect in the autosomal recessive syndrome of osteopetrosis with renal tubular acidosis and cerebral calcification. Proc Natl Acad Sci U S A, 1983. 80: p. 2752-6. PMID 6405388

- Sobacchi, C., et al., The mutational spectrum of human malignant autosomal recessive osteopetrosis. Hum Mol Genet, 2001. 10(17): p. 1767-73. PMID 11532986

- Stehberger, P. A., et al., Localization and regulation of the ATP6V0A4 (a4) vacuolar H+-ATPase subunit defective in an inherited form of distal renal tubular acidosis. J Am Soc Nephrol, 2003. 14(12): p. 3027-38. PMID 14638902

- Stevens, T. H., and Forgac, M. Structure, function and regulation of the vacuolar (H+)-ATPase. Annu. Rev. Cell Dev. Biol., 1997. 13: p. 779-808. PMID 9442887

- Stover, E. H., et al., Novel ATP6V1B1 and ATP6V0A4 mutations in autosomal recessive distal renal tubular acidosis with new evidence for hearing loss. J Med Genet, 2002. 39(11): p. 796-803. PMID 12414817

- Sumner, J.P., et al., Regulation of plasma membrane V-ATPase activity by dissociation of peripheral subunits. J Biol Chem, 1995. 270(10): p. 5649-53. PMID 7890686

- Susani, L., et al., TCIRG1-dependent recessive osteopetrosis: mutation analysis, functional identification of the splicing defects, and in vitro rescue by U1 snRNA. Hum Mutat, 2004. 24(3): p. 225-35. PMID 15300850

- Whyteside, G., et al., Assembly of the yeast vacuolar H+-ATPase and ATP hydrolysis occurs in the absence of subunit c". FEBS Letters, 2005. 579: p. 2981-5. PMID 15907326

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